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"""Tests for the minimal strict V1 input schema."""
from datetime import date
import pytest
from pydantic import ValidationError
from sentinel.user_input import (
AlcoholConsumption,
# Models
Anthropometrics,
AspirinUse,
BreastHealthHistory,
CancerType,
ChronicCondition,
ClinicalTests,
ComplexionLevel,
Country,
Demographics,
DermatologicProfile,
DREResult,
Ethnicity,
FamilyMemberCancer,
FamilyRelation,
FamilySide,
FemaleSmallMolesCategory,
FemaleSpecific,
FemaleTanResponse,
FrecklingIntensity,
GeneticMutation,
HormoneUse,
HormoneUseHistory,
Lifestyle,
MaleSmallMolesCategory,
MenstrualHistory,
NSAIDUse,
ParityHistory,
PersonalMedicalHistory,
PhysicalActivityLevel,
PSATest,
RelationshipDegree,
Sex,
SmokingHistory,
SmokingStatus,
SymptomEntry,
SymptomType,
UserInput,
USGeographicRegion,
)
class TestStrictSchema:
"""Test schema strictness and validation."""
def test_strict_forbids_extra_fields(self):
"""Test that extra fields are rejected."""
with pytest.raises(ValidationError) as exc_info:
UserInput(
demographics=Demographics(
age_years=45,
sex=Sex.FEMALE,
anthropometrics=Anthropometrics(height_cm=165, weight_kg=70),
),
lifestyle=Lifestyle(
smoking=SmokingHistory(status=SmokingStatus.NEVER),
alcohol_consumption=AlcoholConsumption.NONE,
),
personal_medical_history=PersonalMedicalHistory(),
extra_field="should_fail",
)
assert "extra inputs are not permitted" in str(exc_info.value).lower()
def test_required_fields_enforced(self):
"""Test that required fields must be present."""
with pytest.raises(ValidationError):
UserInput(
demographics=Demographics(
age_years=45,
# Missing sex
anthropometrics=Anthropometrics(height_cm=165, weight_kg=70),
),
lifestyle=Lifestyle(
smoking=SmokingHistory(status=SmokingStatus.NEVER),
alcohol_consumption=AlcoholConsumption.NONE,
),
personal_medical_history=PersonalMedicalHistory(),
)
def test_enum_validation(self):
"""Test that only valid enum values are accepted."""
with pytest.raises(ValidationError):
UserInput(
demographics=Demographics(
age_years=45,
sex="invalid_sex", # Should be Sex enum
anthropometrics=Anthropometrics(height_cm=165, weight_kg=70),
),
lifestyle=Lifestyle(
smoking=SmokingHistory(status=SmokingStatus.NEVER),
alcohol_consumption=AlcoholConsumption.NONE,
),
personal_medical_history=PersonalMedicalHistory(),
)
def test_numeric_constraints(self):
"""Test that numeric fields adhere to their defined ranges."""
with pytest.raises(ValidationError):
UserInput(
demographics=Demographics(
age_years=150, # Too high
sex=Sex.FEMALE,
anthropometrics=Anthropometrics(height_cm=165, weight_kg=70),
),
lifestyle=Lifestyle(
smoking=SmokingHistory(status=SmokingStatus.NEVER),
alcohol_consumption=AlcoholConsumption.NONE,
),
personal_medical_history=PersonalMedicalHistory(),
)
def test_date_parsing(self):
"""Test that date fields correctly accept datetime.date objects."""
test_date = date(2023, 1, 15)
user = UserInput(
demographics=Demographics(
age_years=45,
sex=Sex.FEMALE,
anthropometrics=Anthropometrics(height_cm=165, weight_kg=70),
),
lifestyle=Lifestyle(
smoking=SmokingHistory(status=SmokingStatus.NEVER),
alcohol_consumption=AlcoholConsumption.NONE,
),
personal_medical_history=PersonalMedicalHistory(),
clinical_tests=ClinicalTests(
psa=PSATest(
value_ng_ml=2.5,
date=test_date,
)
),
)
assert user.clinical_tests.psa.date == test_date
def test_minimal_valid_input(self):
"""Test a minimal valid input."""
user = UserInput(
demographics=Demographics(
age_years=45,
sex=Sex.FEMALE,
anthropometrics=Anthropometrics(height_cm=165, weight_kg=70),
),
lifestyle=Lifestyle(
smoking=SmokingHistory(status=SmokingStatus.NEVER),
alcohol_consumption=AlcoholConsumption.NONE,
),
personal_medical_history=PersonalMedicalHistory(),
)
assert user.demographics.age_years == 45
assert user.demographics.sex == Sex.FEMALE
assert user.schema_version == "v1.0"
def test_comprehensive_input(self):
"""Test a comprehensive input with all sections populated."""
user = UserInput(
demographics=Demographics(
age_years=45,
sex=Sex.FEMALE,
ethnicity=Ethnicity.WHITE,
anthropometrics=Anthropometrics(height_cm=165, weight_kg=70),
country=Country.UNITED_STATES,
education_level=16,
townsend_index=0.5,
),
lifestyle=Lifestyle(
smoking=SmokingHistory(
status=SmokingStatus.FORMER,
cigarettes_per_day=20.0,
years_smoked=10.0,
years_since_quit=5.0,
pack_years=10.0,
),
alcohol_consumption=AlcoholConsumption.MODERATE,
physical_activity_level=PhysicalActivityLevel.MODERATE,
),
family_history=[
FamilyMemberCancer(
relation=FamilyRelation.MOTHER,
cancer_type=CancerType.BREAST,
age_at_diagnosis=55,
degree=RelationshipDegree.FIRST,
side=FamilySide.MATERNAL,
)
],
personal_medical_history=PersonalMedicalHistory(
chronic_conditions=[ChronicCondition.DIABETES],
previous_cancers=[],
genetic_mutations=[],
has_polyps=False,
aspirin_use=AspirinUse.CURRENT,
nsaid_use=NSAIDUse.NEVER,
),
female_specific=FemaleSpecific(
menstrual=MenstrualHistory(
age_at_menarche=12,
age_at_menopause=None,
),
parity=ParityHistory(
num_live_births=2,
age_at_first_live_birth=28,
),
hormone_use=HormoneUseHistory(estrogen_use=HormoneUse.NEVER),
breast_health=BreastHealthHistory(
num_biopsies=1,
atypical_hyperplasia=False,
),
),
clinical_tests=ClinicalTests(
psa=PSATest(
value_ng_ml=2.5,
date=date(2023, 1, 15),
)
),
symptoms=[
SymptomEntry(
symptom_type=SymptomType.ABDOMINAL_PAIN,
onset_date=date(2023, 1, 10),
duration_days=5,
)
],
dermatologic=DermatologicProfile(
region=USGeographicRegion.CENTRAL,
complexion=ComplexionLevel.MEDIUM,
freckling=FrecklingIntensity.MILD,
female_tan=FemaleTanResponse.MODERATE,
female_small_moles=FemaleSmallMolesCategory.LESS_THAN_FIVE,
male_has_two_or_more_big_moles=False,
solar_damage=False,
),
)
assert user.demographics.ethnicity == Ethnicity.WHITE
assert user.lifestyle.smoking.status == SmokingStatus.FORMER
assert len(user.family_history) == 1
assert user.family_history[0].cancer_type == CancerType.BREAST
assert user.female_specific is not None
assert user.female_specific.parity.num_live_births == 2
def test_female_specific_optional(self):
"""Test that female_specific is optional."""
user = UserInput(
demographics=Demographics(
age_years=45,
sex=Sex.MALE, # Male user
anthropometrics=Anthropometrics(height_cm=175, weight_kg=80),
),
lifestyle=Lifestyle(
smoking=SmokingHistory(status=SmokingStatus.NEVER),
alcohol_consumption=AlcoholConsumption.NONE,
),
personal_medical_history=PersonalMedicalHistory(),
female_specific=None, # Should be allowed for males
)
assert user.female_specific is None
def test_nested_strict_models(self):
"""Test that nested models also forbid extra fields."""
with pytest.raises(ValidationError):
Demographics(
age_years=45,
sex=Sex.FEMALE,
anthropometrics=Anthropometrics(height_cm=165, weight_kg=70),
extra_field="should_fail",
)
def test_list_fields_default_to_empty(self):
"""Test that list fields default to empty lists."""
user = UserInput(
demographics=Demographics(
age_years=45,
sex=Sex.FEMALE,
anthropometrics=Anthropometrics(height_cm=165, weight_kg=70),
),
lifestyle=Lifestyle(
smoking=SmokingHistory(status=SmokingStatus.NEVER),
alcohol_consumption=AlcoholConsumption.NONE,
),
personal_medical_history=PersonalMedicalHistory(),
)
assert user.family_history == []
assert user.clinical_tests.psa is None
assert user.symptoms == []
def test_enum_completeness(self):
"""Test that all enums are covered."""
# Test that we can instantiate all enum values
assert Sex.MALE == "male"
assert Ethnicity.WHITE == "white"
assert Country.UNITED_STATES == "us"
def test_chronic_condition_enum_includes_anaemia_and_endometrial(self):
"""Test that new chronic conditions are in the enum."""
assert ChronicCondition.ANAEMIA == "anaemia"
assert ChronicCondition.ENDOMETRIAL_POLYPS == "endometrial_polyps"
assert SmokingStatus.CURRENT == "current"
assert AlcoholConsumption.HEAVY == "heavy"
assert PhysicalActivityLevel.HIGH == "high"
assert CancerType.MELANOMA == "melanoma"
assert GeneticMutation.BRCA1 == "brca1"
assert ChronicCondition.COPD == "copd"
assert FamilyRelation.MOTHER == "mother"
assert RelationshipDegree.FIRST == "1"
assert FamilySide.MATERNAL == "maternal"
assert DREResult.NORMAL == "normal"
assert HormoneUse.CURRENT == "current"
assert USGeographicRegion.SOUTHERN == "southern"
# Test str, Enum values (converted from IntEnum)
assert ComplexionLevel.DARK == "dark"
assert FrecklingIntensity.SEVERE == "severe"
assert FemaleTanResponse.NONE == "none"
assert MaleSmallMolesCategory.SEVENTEEN_OR_MORE == "seventeen_or_more"
assert FemaleSmallMolesCategory.TWELVE_OR_MORE == "twelve_or_more"
def test_boolean_fields(self):
"""Test boolean fields in dermatologic profile."""
user = UserInput(
demographics=Demographics(
age_years=45,
sex=Sex.MALE,
anthropometrics=Anthropometrics(height_cm=175, weight_kg=80),
),
lifestyle=Lifestyle(
smoking=SmokingHistory(status=SmokingStatus.NEVER),
alcohol_consumption=AlcoholConsumption.NONE,
),
personal_medical_history=PersonalMedicalHistory(),
dermatologic=DermatologicProfile(
region=USGeographicRegion.CENTRAL,
complexion=ComplexionLevel.MEDIUM,
freckling=FrecklingIntensity.MILD,
male_sunburn=True,
male_has_two_or_more_big_moles=False,
male_small_moles=MaleSmallMolesCategory.SEVEN_TO_SIXTEEN,
solar_damage=True,
),
)
assert user.dermatologic.male_sunburn is True
assert user.dermatologic.male_has_two_or_more_big_moles is False
assert user.dermatologic.solar_damage is True
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